Environmental changes in biodiversity hotspot ecosystems of
South Ecuador: RESPonse and feedback effECTs (FOR2730)

Abstract:

Summary Community trait assembly in highly diverse tropical rainforests is still poorly understood. Based on more than a decade of field measurements in a biodiversity hotspot of southern Ecuador, we implemented plant trait variation and improved soil organic matter dynamics in a widely used dynamic vegetation model (the Lund-Potsdam-Jena General Ecosystem Simulator, LPJ-GUESS) to explore the main drivers of community assembly along an elevational gradient. In the model used here (LPJ-GUESS-NTD, where NTD stands for nutrient-trait dynamics), each plant individual can possess different trait combinations, and the community trait composition emerges via ecological sorting. Further model developments include plant growth limitation by phosphorous (P) and mycorrhizal nutrient uptake. The new model version reproduced the main observed community trait shift and related vegetation processes along the elevational gradient, but only if nutrient limitations to plant growth were activated. In turn, when traits were fixed, low productivity communities emerged due to reduced nutrient-use efficiency. Mycorrhizal nutrient uptake, when deactivated, reduced net primary production (NPP) by 61–72% along the gradient. Our results strongly suggest that the elevational temperature gradient drives community assembly and ecosystem functioning indirectly through its effect on soil nutrient dynamics and vegetation traits. This illustrates the importance of considering these processes to yield realistic model predictions.

Abstract:

Summary
Community analyses of arbuscular mycorrhizal fungi (AMF) using ribosomal small subunit (SSU) or internal transcribed spacer (ITS) DNA sequences often suffer from low resolution or coverage. We developed a novel sequencing based approach for a highly resolving and specific profiling of AMF communities.
We took advantage of previously established AMF-specific PCR primers that amplify a c. 1.5-kb long fragment covering parts of SSU, ITS and parts of the large ribosomal subunit (LSU), and we sequenced the resulting amplicons with single molecule real-time (SMRT) sequencing.
The method was applicable to soil and root samples, detected all major AMF families and successfully discriminated closely related AMF species, which would not be discernible using SSU sequences. In inoculation tests we could trace the introduced AMF inoculum at the molecular level. One of the introduced strains almost replaced the local strain(s), revealing that AMF inoculation can have a profound impact on the native community.
The methodology presented offers researchers a powerful new tool for AMF community analysis because it unifies improved specificity and enhanced resolution, whereas the drawback of medium sequencing throughput appears of lesser importance for low-diversity groups such as AMF.

Abstract:

Previous research from the tropics indicates that AMF may be well adapted to organic soils and even represent the dominant mycorrhizal form, though the extraradical part of the symbiosis was omitted as in most other tropical studies. Our study aims at characterizing the extraradical part of arbuscular mycorrhizal fungi (AMF) in a highly organic tropical montane forest soil in Southern Ecuador. Based on recent studies on the interaction of AM fungal hyphae and litter we hypothesized that within the organic layer AM hyphae grow in close contact with decomposing material. To test this idea, AM fungal hyphal distribution in the organic layer was determined by directly staining roots and decomposing leaves and extracting hyphae from the remaining particulate organic material. AM and non-AM fungal hyphae were analyzed, as well as root colonization patterns. Our results showed that AMF indeed represented the dominant mycorrhizal form with an average root colonization of 43%. The extraradical AM hyphal length ranged from 2 to 34 m g?1 soil with a mean of 10.4 m g?1 soil (equals 3.1 m cm?3 soil), and therefore exceeded root length about 13-fold. As hypothesized, 29% of AM extraradical hyphae were closely attached to decomposing leaves. These hyphae were mainly located at the leaf surface, though in some parts leaf veins and inner leaf tissues were colonized. More than half of AM hyphal biomass was detected on the root surface, a pattern potentially driven by the predominant Paris-type AMF. Non-AM fungal hyphae colonized decomposing material to a significantly greater extent, though hyphal length attached to roots was equal. This study supports the adaptation of AMF to highly organic soils in the tropics and the existence of a widespread extraradical mycelium, which is not readily detectable by standard methods. The close association with decomposing leaves most likely improves direct nutrient uptake from decomposed material and points to a potential indirect contribution of AMF to the decomposition process.