Environmental changes in biodiversity hotspot ecosystems of
South Ecuador: RESPonse and feedback effECTs (FOR2730)

Abstract:

This study addresses transpiration in a tropical evergreen mountain forest in the Ecuadorian Andes from the leaf to the stand level, with emphasis on nocturnal plant-water relations. The stand level: Evapotranspiration (ET) measured over 12 months with the Eddy-Covariance (ECov) technique proved as the major share (79%) of water received from precipitation. Irre- spective of the humid climate, the vegetation transpired day and night. On average, 15.3% of the total daily ET were due to nocturnal transpiration. Short spells of drought increased daily ET, mainly by enhanced nighttime transpiration. Following leaf transpiration rather than air temperature and atmospheric water vapor deficit, ET showed its maximum already in the morning hours. The tree level: Due to the humid climate, the total water consumption of trees was generally low. Nevertheless, xylem sap flux measurements separated the investigated tree species into a group showing relatively high and another one with low sap flux rates. The leaf level: Transpiration rates of Tapirira guianensis, a member of the high- flux-rate group, were more than twice those of Ocotea aciphylla, a representative of the group showing low sap flux rates. Representatives of the Tapirira group operated at a rela- tively high leaf water potential but with a considerable diurnal amplitude, while the leaves of the Ocotea group showed low water potential and small diurnal fluctuations. Overall, the Tapirira group performed anisohydrically and the Ocotea group isohydrically. Grouping of the tree species by their water relations complied with the extents of the diurnal stem circum- ference fluctuations. Nighttime transpiration and hydrological type: In contrast to the isohy- drically performing trees of the Ocotea group, the anisohydric trees showed considerable water vapour pressure deficit (VPD)-dependent nocturnal transpiration. Therefore, we con- clude that nighttime ET at the forest level is mainly sourced by the tree species with aniso- hydric performance.

Abstract:

Biodiversity and ecosystem functions are highly threatened by global change. It has been proposed that geodiversity can be used as an easy-to-measure surrogate of biodiversity to guide conservation management. However, so far, there is mixed evidence to what extent geodiversity can predict biodiversity and ecosystem functions at the regional scale relevant for conservation planning. Here, we analyse how geodiversity computed as a compound index is suited to predict the diversity of four taxa and associated ecosystem functions in a tropical mountain hotspot of biodiversity and compare the results with the predictive power of environmental conditions and resources (climate, habitat, soil). We show that combinations of these environmental variables better explain species diversity and ecosystem functions than a geodiversity index and identified climate variables as more important predictors than habitat and soil variables, although the best predictors differ between taxa and functions. We conclude that a compound geodiversity index cannot be used as a single surrogate predictor for species diversity and ecosystem functions in tropical mountain rain forest ecosystems and is thus little suited to facilitate conservation management at the regional scale. Instead, both the selection and the combination of environmental variables are essential to guide conservation efforts to safeguard biodiversity and ecosystem functions.

Abstract:

Tropical mountain ecosystems are threatened by climate and land-use changes. Their diversity and complexity make projec- tions how they respond to environmental changes challenging. A suitable way are trait-based approaches, by distinguishing between response traits that determine the resistance of species to environmental changes and efect traits that are relevant for species’ interactions, biotic processes, and ecosystem functions. The combination of those approaches with land surface models (LSM) linking the functional community composition to ecosystem functions provides new ways to project the response of ecosystems to environmental changes. With the interdisciplinary project RESPECT, we propose a research framework that uses a trait-based response-efect-framework (REF) to quantify relationships between abiotic conditions, the diversity of functional traits in communities, and associated biotic processes, informing a biodiversity-LSM. We apply the framework to a megadiverse tropical mountain forest. We use a plot design along an elevation and a land-use gradient to collect data on abiotic drivers, functional traits, and biotic processes. We integrate these data to build the biodiversity- LSM and illustrate how to test the model. REF results show that aboveground biomass production is not directly related to changing climatic conditions, but indirectly through associated changes in functional traits. Herbivory is directly related to changing abiotic conditions. The biodiversity-LSM informed by local functional trait and soil data improved the simulation of biomass production substantially. We conclude that local data, also derived from previous projects (platform Ecuador), are key elements of the research framework. We specify essential datasets to apply this framework to other mountain ecosystems.

Abstract:

Abstract Conversion of tropical forests is among the primary causes of global environmental change. The loss of their important environmental services has prompted calls to integrate ecosystem services (ES) in addition to socio-economic objectives in decision-making. To test the effect of accounting for both ES and socio-economic objectives in land-use decisions, we develop a new dynamic approach to model deforestation scenarios for tropical mountain forests. We integrate multi-objective optimization of land allocation with an innovative approach to consider uncertainty spaces for each objective. These uncertainty spaces account for potential variability among decision-makers, who may have different expectations about the future. When optimizing only socio-economic objectives, the model continues the past trend in deforestation (1975–2015) in the projected land-use allocation (2015–2070). Based on indicators for biomass production, carbon storage, climate and water regulation, and soil quality, we show that considering multiple ES in addition to the socio-economic objectives has heterogeneous effects on land-use allocation. It saves some natural forest if the natural forest share is below 38%, and can stop deforestation once the natural forest share drops below 10%. For landscapes with high shares of forest (38%–80% in our study), accounting for multiple ES under high uncertainty of their indicators may, however, accelerate deforestation. For such multifunctional landscapes, two main effects prevail: (a) accelerated expansion of diversified non-natural areas to elevate the levels of the indicators and (b) increased landscape diversification to maintain multiple ES, reducing the proportion of natural forest. Only when accounting for vascular plant species richness as an explicit objective in the optimization, deforestation was consistently reduced. Aiming for multifunctional landscapes may therefore conflict with the aim of reducing deforestation, which we can quantify here for the first time. Our findings are relevant for identifying types of landscapes where this conflict may arise and to better align respective policies.

Abstract:

In tropical agriculture, the vigorously growing Bracken fern causes severe problems by invading pastures and out-competing the common pasture grasses. Due to infestation by that weed, pastures are abandoned after a few years, and as a fatal consequence, the biodi- versity-rich tropical forest is progressively cleared for new grazing areas. Here we present a broad physiological comparison of the two plant species that are the main competitors on the pastures in the tropical Ecuadorian Andes, the planted forage grass Setaria sphacelata and the weed Bracken (Pteridium arachnoideum).With increasing elevation, the competitive power of Bracken increases as shown by satellite data of the study region. Using data obtained from field measurements, the annual biomass production of both plant species, as a measure of their competitive strength, was modeled over an elevational gradient from 1800 to 2800 m. The model shows that with increasing elevation, biomass production of the two species shifts in favor of Bracken which, above 1800 m, is capable of outgrowing the grass. In greenhouse experiments, the effects on plant growth of the presumed key vari- ables of the elevational gradient, temperature and UV radiation, were separately analyzed. Low temperature, as well as UV irradiation, inhibited carbon uptake of the C4-grass more than that of the C3-plant Bracken. The less temperature-sensitive photosynthesis of Bracken and its effective protection from UV radiation contribute to the success of the weed on the highland pastures. In field samples of Bracken but not of Setaria, the content of flavo- noids as UV-scavengers increased with the elevation. Combining modeling with measure- ments in greenhouse and field allowed to explain the invasive growth of a common weed in upland pastures. The performance of Setaria decreases with elevation due to suboptimal photosynthesis at lower temperatures and the inability to adapt its cellular UV screen.

Abstract:

Ecosystem water regulation couples energy and water balance, depends on the integrity of the ecosystem, and responds to changes in climate. Changes in tree-water relationships in the biodiversity hotspot of the tropical Andes in southern Ecuador might be potentially observed at the level of individual trees, thus providing an efficient ecosystem monitoring method with applications in forest management and conservation at the tree and landscape levels. In this study, we combine area-average measurements from a laser scintillometer above the forest with optical satellite data at high spatial resolution to obtain area-wide evapotranspiration data. The processing of field data includes the calculation of energy storage in forest biomass and the partitioning of evapotranspiration into transpiration and evaporation. Satellite-based estimates are calibrated by using tower flux measurements and meteorological data within periods of humid and less-humid atmosphere. The annual evapotranspiration was 1316 mm, of which 1086 mm per year corresponds to the forest transpiration at the study site. Average values of 4.7 and 4.1 mm d-1 per tree crown are observed under humid and less-humid atmospheric conditions, respectively, when applying high-resolution area-wide evapotranspiration in individual crown analysis. Approximately 24% of the observed crowns show a positive monthly change in ET, and 51% of the crowns show a significant change in the daily ET, which can be considered sensitive individuals concerning water relationships. The limitations in the area-wide evapotranspiration at the crown level can be explained by considering the spectral responses of the crown individuals. The presented method can be robustly deployed in the ecological monitoring of mountain forests.

Abstract:

Ecosystem water regulation couples energy and water balance, depends on the integrity of the ecosystem, and responds to changes in climate. Changes in tree-water relationships in the biodiversity hotspot of the tropical Andes in southern Ecuador might be potentially observed at the level of individual trees, thus providing an ef?- cient ecosystem monitoring method with applications in forest management and conservation at the tree and landscape levels. In this study,we combine area-averagemeasurements froma laser scintillometer above the for- est with optical satellite data at high spatial resolution to obtain area-wide evapotranspiration data. The process- ing of ?eld data includes the calculation of energy storage in forest biomass and the partitioning of evapotranspiration into transpiration and evaporation. Satellite-based estimates are calibrated by using tower ?ux measurements and meteorological data within periods of humid and less-humid atmosphere. The annual evapotranspiration was 1316 mm, of which 1086 mm per year corresponds to the forest transpiration at the study site. Average values of 4.7 and 4.1 mm d?1 per tree crown are observed under humid and less-humid at- mospheric conditions, respectively, when applying high-resolution area-wide evapotranspiration in individual crown analysis. Approximately 24% of the observed crowns show a positive monthly change in ET, and 51% of the crowns show a signi?cant change in the daily ET, which can be considered sensitive individuals concerning water relationships. The limitations in the area-wide evapotranspiration at the crown level can be explained by considering the spectral responses of the crown individuals. The presented method can be robustly deployed in the ecological monitoring of mountain forests.

Abstract:

Land-use and climate change are major threats to biodiversity and ecosystem functions. Most of the current biodiversity monitoring systems are based on periodic records of the populations of a set of threatened or popular ‘flagship’ indicator species. In contrast to the abundance-based monitoring of species, also specific indicators of processes and functional interactions in an ecosystem may become targets of a more functional monitoring which can unveil early responses of an ecosystem to environmental changes at different spatial and temporal scales. The contributions of this Special Issue present such functional indicators for assessing and predicting responses to environmental changes of ecosystem functions in a hotspot of tropical biodiversity.

Abstract:

The effects of an increasing moisture on trees of the tropical species-rich mountain rain forest in the South Ecuadorian Andes was investigated, using the daily total water consumption (TWC) and the instantaneous water use efficiency (WUE, ratio of photosynthetic CO2 uptake per water loss by transpiration) as ecophysiological indicators. Two canopy and one sub-canopy tree species, (Vismia tomentosa, Clusiaceae, an as of yet unknown Lauracee, and Spirotheca rosea, Bombacaceae) were the experimental objects. Seasonal changes as well as a long-term (18 months) trend of increasing precipitation caused an inverse reaction of the TWC of the trees. Because of a rather unlimited water supply to the trees from a permanently high water content of the soil, transpiration followed mainly the atmospheric demand of water vapor, and increasing moisture hence reduced water loss by transpiration. It was hypothesized that in spite of the reduction in transpiratory water loss photosynthetic carbon acquisition would be not or less affected due to an increase in water use efficiency. Concomitant measurements of photosynthetic net CO2 uptake showed the expected increase of WUE in V. tomentosa and S. rosea, but no clear reaction of the Lauracee. Accompanying measurements of stem extension growth confirmed an undiminished growth of V. tomentosa and S. rosea but showed also suspended growth of the Lauracee during the wettest months. While TWC can be continuously monitored with the heat dissipation technique, WUE is determined by leaf porometry in campaigns for which access to the canopy is required. Simultaneous recordings of the gas exchange of leaves at 4 different positions in the crown of one of the experimental trees (V. tomentosa) showed the usability of the trait WUE in combination with the total daily water consumption as indicator set for assessing the response of trees to a subtly changing climate. However, not all tree species appear as likewise useful indicator trees.

Abstract:

The relationship between canopy-level evapotranspiration (ETSci) and leaf-level transpiration (Tleaf) as well as photosynthesis (Pleaf) for a homogeneous tropical montane pasture was analyzed over five days using a combination of methods involving a laser scintillometer and a porometer. Weather conditions ranged from overcast to sunny during the period of study. The gas exchange of the leaves of the dominant pasture grass Setaria sphacelata (transpiration vs. photosyn¬thetic CO2 net uptake ) was measured with a porometer and physiologically interpreted on the background of microclimate variables (photosynthetic active radiation (PAR) as proxy for total light intensity, temperature, water vapor deficit of the air) and soil moisture data. Water use efficiency (WUE, photosynthetic CO2 net uptake vs water loss by leaf transpiration) of the pasture was used to analyze the grass’ range of response to the environmental variables of the research area. PAR and water vapor deficit of the air (VPD) appeared to be the determinant factors for Tleaf and ETSci. WUE for the Setaria sphacelata pasture ranged from 1.9 to 5.8 ?mol CO2 mmol-1 H20 day-1 and is particularly low during periods of high VPD combined with enhanced insolation during cloudless periods. ET measurements collected by the scintillometer demonstrated a strong correlation with water flux calculated using the Penman-Monteith approach (TPM) (r² = 0.95). Also, Tleaf measured with the porometer showed reasonable coincidence with the ET observations (r² = 0.78). Values of ETSci ranged from 2.26 to 4.96 mm day-1 and Tleaf ranged from 0.83 to 2.41 mm day-1, but only ETSci showed good correspondence with the available energy (net radiation). The lower correlation between Tleaf and canopy-level ETSci compared to that between ETSci and TPM was tested against contaminations from the adjacent fetch area of the scintillometer path, but no effects were found. Likewise, soil water limitations of Tleaf could be ruled out. Therefore, different correlations of ETSci and Tleaf with the incoming energy and VPD may be traced back to a direct effect of the VPD on ET in contrast to its indirect effect on Tleaf which is additionally regulated by physiological processes in the leaf stomata.

Abstract:

High landscape diversity is assumed to increase the number and level of ecosystem services. However, the interactions between ecosystem service provision, disturbance and landscape composition are poorly understood. Here we present a novel approach to include uncertainty in the optimization of land allocation for improving the provision of multiple ecosystem services. We refer to the rehabilitation of abandoned agricultural lands in Ecuador including two types of both afforestation and pasture rehabilitation, together with a succession option. Our results show that high compositional landscape diversity supports multiple ecosystem services (multifunction effect). This implicitly provides a buffer against uncertainty. Our work shows that active integration of uncertainty is only important when optimizing single or highly correlated ecosystem services and that the multifunction effect on landscape diversity is stronger than the uncertainty effect. This is an important insight to support a land-use planning based on ecosystem services.

Abstract:

Increasing demands for livelihood resources in tropical rural areas have led to progressive clearing of biodiverse natural forests. Restoration of abandoned farmlands could counter this process. However, as aims and modes of restoration differ in their ecological and socio-economic value, the assessment of achievable ecosystem functions and bene?ts requires holistic investigation. Here we combine the results from multidisciplinary research for a unique assessment based on a normalization of 23 ecological, economic and social indicators for four restoration options in the tropical Andes of Ecuador. A comparison of the outcomes among afforestation with native alder or exotic pine, pasture restoration with either low-input or intense management and the abandoned status quo shows that both variants of afforestation and intense pasture use improve the ecological value, but low-input pasture does not. Economic indicators favour either afforestation or intense pasturing. Both Mestizo and indigenous Saraguro settlers are more inclined to opt for afforestation.

Abstract:

This paper describes a method of low-altitude remote sensing in combination with in situ measurements (leaf area, spectroscopy, and position) to monitor the postfire canopy recovery of two competing grassland species. The method was developed in the Andes of Ecuador, where a tethered balloon with a digital camera was deployed to record a time series of very high spatial resolution imagery ( nominal resolution = 2cm ) of an experimental plot covered by two competing species: 1) the pasture grass, Setaria sphacelata; and 2) the invasive southern bracken, Pteridium arachnoideum. Image processing techniques were combined to solve geometric issues and construct high-quality mosaics for image classification. The semiautomatic and object-oriented classification method was based on geometrical and textural attributes of image segments and showed promising results for detecting the invasive bracken fern in Setaria pastures (performance by area under the curve, AUC = 0.88). Valuable insights are given into vegetation monitoring applications using unmanned aerial vehicles, which produces a time series of species-specific maps, including foliage projective cover (FPC) and leaf area index (LAI). This new method constitutes an important and accessible tool for ecological investigations of competing species in pastures and validation of remote sensing information on mountain environments.

Abstract:

In the anthropogenic fire-disturbed ecosystem of the San Francisco Valley in the Andes of southeastern Ecuador, dense stands of an aggressive invasive weed, the southern bracken fern (Pteridium arachnoideum and Pteridium caudatum), dominate the landscape. To secure sustainable land management in the region, a comprehensive understanding of bracken spatial-distribution patterns and life cycle dynamics is crucial. We investigated the possibility of detecting bracken-infested areas and frond status (live, fungi-infected, and dead) by means of a high-resolution QuickBird scene from October 2010 and spectral signatures based on field spectroscopy. After image pre-processing, a two-step classification procedure first delineates the bracken-infested area by means of a maximum-likelihood hard classification. The probability-guided unmixing classifier with field-derived end-members is applied in the second step to obtain the fractional cover of the different frond statuses per pixel. The results showed that the areas infested by bracken could be distinguished from the other land-cover classes with high accuracy (overall accuracy of 0.9973). Also, the three frond statuses could be accurately classified at the sub-pixel level. The ‘dead’ class was the dominant frond status at the time of image acquisition (October 2010). We conclude that the extreme dry spell in October 2010 was particularly responsible for this dominance.

Abstract:

Tropical mountain forest in the Andes of southeastern Ecuador is regularly destroyed to gain pasture land by cultivating the C4 grass Setaria sphacelata. After recurrent burning of the pastures, the grass is partly outcompeted by the C3 southern bracken (Pteridium arachnoideum). This competition represents the problematic of pasture degradation and increasing deforestation, due to the necessity of new pasture land. Because no information on the growth potential of both species in the Andes of Ecuador is available, a growth simulation model has been improved and properly parameterized with field observations. The measured speciesand site-specific physiological and edaphic parameters are presented in this paper, as well as the model validation with field observations of leaf CO2 assimilation. The validation showed deviations of simulated from observed leaf net assimilation lower than 5% of the observed values. The validated model was run with a fully realistic meteorological forcing of the year 2008 (10 min time step). The main result points to slightly higher growth potential of Setaria with 5879 g m-2 a-1, based on an annual CO2 net assimilation rate of 217 mol CO2m-2 a-1. The calculated growth potential of bracken was 5554 g m-2 a-1, based on the CO2 net assimilation of 197 mol CO2m-2 a-1. In addition, it was shown that decreasing incoming solar radiation and low temperature are favourable weather conditions for bracken in contrary to the pasture grass Setaria.

Abstract:

Pteridium spp. (bracken) is one of the most persistent weeds worldwide. This communication reports for the first time, experiments to control the aggressive neotropical fern, Pteridium arachnoideum. In South Ecuador, where former pastures are overgrown by P. arachnoideum, 13 different control easures were repeated six times over a time period of 23 months: cutting of the fronds, various herbicides, covering with plastic sheeting and alternating combinations thereof. Subsequently, the pasture grass Setaria sphacelata was planted. Growth of P. arachnoideum and later the grass was monitored monthly using the variables cover and height of vegetation. Pteridium arachnoideum frond biomass was determined at the end of the treatments. None of the treatments resulted in a complete eradication of the weed. The efficacy of the reatments differed considerably, but the subsequently planted grass balanced out these differences, suppressing the fern to a cover of <40%. Thus, in spite of the high resistance of P. arachnoideum to any kind of control, regeneration of abandoned pastures is possible, using a two-step strategy: (i) depleting the reserves in the rhizomes by repeated killing of the leaves and (ii) subsequent suppression by a highly competitive pasture grass. For practical weed management, three consecutive treatments with the herbicide mixture of picloram and metsulfuron methyl, or four consecutive cuts of the fronds, are recommended at intervals of four months to achieve maximum control.

Abstract:

The ecology of tropical bracken, which occurs in tropical regions, is not well known. We studied its response to weather variations and burning in the south Ecuadorian Andes, where this weed had already overgrown 40% of the pastureland. In field observations, a constant 1:1 ratio of emerging and dying leaves suggested limitation of frond density by nutrient shortage. Short-term deviations from that ratio could be related to weather variations. Spells of dry weather temporarily increased mortality but stimulated emergence of new fronds. Lifespan of the fronds produced immediately after a fire was longer than of those produced during unaffected bracken growth. A burst of frond development during the initial 2 to 3 mo was observed after a fire followed by self-thinning to a stable level. To analyze the effect of fire on bracken, rhizomes were treated with heat pulses. Rhizomes were heat tolerant up to 70 C, and frond production from short shoots was enhanced by elevated temperature. Burning apparently releases apical dominance of developed fronds, as does cutting, and stimulates bud break. The local practice of pasture maintenance in Ecuador of repeated burning favors growth of the fern.

Abstract:

Abstract Mountain pastures dominated by the pasture grass Setaria sphacelata in the Andes of southern Ecuador are heavily infested by southern bracken (Pteridium arachnoideum), a major problem for pasture management. Field observations suggest that bracken might outcompete the grass due to its competitive strength with regard to the absorption of photosynthetically active radiation (PAR). To understand the PAR absorption potential of both species, the main aim of the current paper is to (i) parameterize a radiation scheme of a two-big leaf model by deriving structural (LAI, leaf angle parameter) and optical(leaf albedo, transmittance) plant traits for average individuals from field surveys, (ii) to initialise the properly parameterized radiation scheme with realistic global irradiation conditions of the Rio San Francisco Valley in the Andes of southern Ecuador, and (iii) to compare the PAR absorption capabilities of both species under typical local weather conditions. Field data show that bracken reveals a slightly higher average leaf area index (LAI) and more horizontally oriented leaves in comparison to Setaria. Spectrometer measurements reveal that bracken and Setaria are characterised by a similar average leaf absorptance. Simulations with the average diurnal course of incoming solar radiation (1998-2005) and the mean leaf-sun geometry reveal that PAR absorption is fairly equal for both species. However, the comparison of typical clear and overcast days show that two parameters, (i) the relation of incoming diffuse and direct irradiance, and (ii) the leaf-sun geometry play a major role for PAR absorption in the two-big leaf approach: Under cloudy sky conditions (mainly diffuse irradiance), PAR absorption is slightly higher for Setaria while under clear sky conditions (mainly direct irradiance), the average bracken individual is characterized by a higher PAR absorption potential. (~74 MJ m-2 a-1) . The latter situation which occurs if the maximum daily irradiance exceeds 615 W m-2 is mainly due to the nearly orthogonal incidence of the direct solar beam onto the horizontally oriented frond area which implies a high amount of direct PAR absorption during the noon maximum of direct irradiance. Such situations of solar irradiance favouring a higher PAR absorptance of bracken occur in ~36% of the observation period (1998-2005). By considering the annual course of PAR irradiance in the San Francisco Valley, the clear advantage of bracken on clear days (36% of all days) is completely compensated by the slight but more frequent advantage of Setaria under overcast conditions (64% of all days). This means that neither bracken nor Setaria show a distinct advantage in PAR absorption capability under the current climatic conditions of the study area.

Abstract:

Long-term field studies in the scope of a multidisciplinary project in southern Ecuador revealed extraordinary high species numbers of many organismic groups. This article discusses reasons for the outstanding vascular plant diversity using a hierarchical scale-oriented top-down approach (Grüninger 2005), from the global scale to the local microscale. The global scale explains general (paleo-) ecological factors valid for most parts of the humid tropics, addressing various hypotheses and theories, such as the ?greater effective evolutionary time?, constant input of ?accidentals?, the ?seasonal variability hypothesis?, the ?intermediate disturbance hypothesis?, and the impact of soil fertility. The macroscale focuses on the Andes in northwestern South America. The tropical Andes are characterised by many taxa of restricted range which is particularly true for the Amotape-Huancabamba region, i.e. the so called Andean Depression, which is effective as discrete phytogeographic transition as well as barrier zone. Interdigitation of northern and southern flora elements, habitat fragmentation, geological and landscape history, and a high speciation rate due to rapid genetic radiation of some taxa contribute to a high degree of diversification. The mesoscale deals with the special environmental features of the eastern mountain range, the Cordillera Real and surrounding areas in southern Ecuador. Various climatic characteristics, the orographic heterogeneity, the geologic and edaphic conditions as well as human impact are the most prominent factors augmenting plant species diversity. On microscale, prevailing regimes of disturbance and environmental stresses, the orographic basement, as well as the general role on the various mountain chains are considered. Here, micro-habitats e.g. niches for epiphytes, effects of micro-relief patterns, and successions after small-sized disturbance events are screened. Direct effects of human impact are addressed and a perspective of possible effects of climate change on plant diversity is presented.

Abstract:

Ecological patterns are difficult to extract directly from vegetation data. The respective surveys provide a high number of interrelated species occurrence variables. Since often only a limited number of ecological gradients determine species distributions, the data might be represented by much fewer but effectively independent variables. This can be achieved by reducing the dimensionality of the data. Conventional methods are either limited to linear feature extraction (e.g., principal component analysis, and Classical Multidimensional Scaling, CMDS) or require a priori assumptions on the intrinsic data dimensionality (e.g., Nonmetric Multidimensional Scaling, NMDS, and self organized maps, SOM). In this studywe explored the potential of Isometric FeatureMapping (Isomap). This new method of dimensionality reduction is a nonlinear generalization of CMDS. Isomap is based on a nonlinear geodesic inter-point distance matrix. Estimating geodesic distances requires one free threshold parameter, which defines linear geometry to be preserved in the global nonlinear distance structure.We compared Isomap to its linear (CMDS) and nonmetric (NMDS) equivalents. Furthermore, the use of geodesic distances allowed also extending NMDS to a version that we calledNMDS-G. In additionwe investigated a supervised Isomap variant (S-Isomap) and showed that all these techniques are interpretable within a single methodical framework. As an example we investigated seven plots (subdivided in 456 subplots) in different secondary tropical montane forests with 773 species of vascular plants. A key problem for the study of tropical vegetation data is the heterogeneous small scale variability implying large ranges of &#946;- diversity. The CMDS and NMDSmethods did not reduce the data dimensionality reasonably. On the contrary, Isomap explained 95% of the data variance in the first five dimensions and provided ecologically interpretable visualizations; NMDS-G yielded similar results. The main shortcoming of the latterwas the high computational cost and the requirement to predefine the dimension of the embedding space.The S-Isomap learning scheme didnot improve the Isomap variant for an optimal threshold parameter but substantially improved the nonoptimal solutions. We conclude that Isomap as a new ordination method allows effective representations of high dimensional vegetation data sets. The method is promising since it does not require a priori assumptions, and is computationally highly effective.

Abstract:

Aims: Inferring environmental conditions from characteristic patterns of plant co-occurrences can be crucial for the development of conservation strategies concerning secondary neotropical forests. However, no methodological agreement has been achieved so far regarding the identification and classification of characteristic groups of vascular plant species in the tropics. This study examines botanical and, in particular, statistical aspects to be considered in such analyses. Based on these, we propose a novel data-driven approach for the identification of characteristic plant co-occurrences in neotropical secondary mountain forests. Methods: Floristic inventory data were gathered in secondary tropical mountain forests in Ecuador. Vegetation classification was performed by coupling locally adaptive isometric feature mapping, a non-linear ordination method and fuzzy-c-means clustering. This approach was designed for dealing with underlying non-linearities and uncertainties in the inventory data. Important Findings: The results indicate that the applied non-linear mapping in combination with fuzzy classification of species occurrence allows an effective identification of characteristic groups of co-occurring species as fuzzy-defined clusters. The selected species indicated groups representing characteristic life-form distributions, as they correspond to various stages of forest regeneration. Combining the identified ?characteristic species groups? with meta-information derived from accompanying studies indicated that the clusters can also be related to habitat conditions. In conclusion, we identified species groups either characteristic of different stages of forest succession after clear-cutting or of impact by fire or a landslide. We expect that the proposed data-mining method will be useful for vegetation classification where no a priori knowledge is available.