Environmental changes in biodiversity hotspot ecosystems ofSouth Ecuador: RESPonse and feedback effECTs (FOR2730)

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1-6 of 6 datasets.

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» Sequenced Sebacinales of Ericaceae created by: Sabrina Setaro (last update: 2009-04-24)

» Tulasnellales from orchid mycorrhizas created by: Ingrid Kottke, Juan Pablo Suarez (last update: 2009-06-29)

» Arbuscular mycorrhizal fungal sequences of trees in the pristine forest and seedlings in the reforestation plots and nursery created by: Ingeborg Haug (last update: 2009-06-25)

» Tulasnellales, Sebacinales and Atractiellales associated with terrestrial and epiphytic orchids in RBSF created by: Ingrid Kottke, Darío Cruz, Juan Pablo Suarez, Paulo Herrera (last update: 2010-06-01)

» Sequences of arbuscular mycorrhizal fungi of trees and seedlings in the pristine forest and reforestation plots created by: Ingeborg Haug (last update: 2012-09-13)

» Woody species regeneration on pasture, fern and shrub sites created by: Ximena Palomeque, Nikolay Aguirre, Sven Günter, Patrick Hildebrandt, Michael Weber (last update: 2017-09-04)

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Sequenced Sebacinales of Ericaceae

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Dataset ID:	444
Last updated:	2009-04-24
Dataset creators:	Sabrina Setaro
Contact:	Sabrina Setaro
Temporal coverage:	2003-03-31 00:00:00 - 2007-04-30 00:00:00
Geographic coverage:	unbestimmt
Abstract:	Abstract:
Additional info:	Each data row refers to a sequenced fungal clone.... Additional info: Each data row refers to a sequenced fungal clone. There are various clones belonging to the sample, therefore sequences or data rows must not be considered as different species or individuals. Furthermore, classification of Sebacinales to species level is currently not feasable as the existing species concept is questionable and needs revision.
Keywords:	\| Sebacinales \| mycorrhizal fungi \| Ericaceae \|
Intellectual rights:	FOR816 data user agreement

1. Entity:

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Entity name:	Sebacinales
Entity type:	dataTable
Attributes:	GenBank number of the organism (GenBNoOrg) (Unitless) Organism (Organism) (Unitless) Life form (LifeForm) (Unitless) Species name of the host (HostSpecies) (Unitless) ID of the sample (SampleID) (Unitless) ID of the plot (PlotID) (Unitless) Site name (Site_name) (Unitless) ID of the culture (CultureID) (Unitless) Date and Time (datetime) (Unitless)

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Tulasnellales from orchid mycorrhizas

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Dataset ID:	584
Last updated:	2009-06-29
Dataset creators:	Ingrid Kottke Juan Pablo Suarez
Contact:	Ingrid Kottke Juan Pablo Suarez
Temporal coverage:	2002-11-30 00:00:00 - 2005-05-30 00:00:00
Geographic coverage:	Transekt 2
Abstract:	Mycorrhizal state of epiphytic orchids was contro... Abstract: Mycorrhizal state of epiphytic orchids was controversially discussed and state and mycobionts of the pleurothallidin orchids, occurring abundantly and with a high number of species on stems of trees in the Andean cloud forest, were unknown. Root samples of 77 adult individuals on total of the epiphytic orchids Stelis hallii, Stelis superbiens, Pleurothallis lilijae, and Stelis concinna were collected in a tropical mountain rain forest of southern Ecuador. Ultrastructural evidence of symbiotic interaction was combined with molecular sequencing of fungi directly from the mycorrhizas and isolation of mycobionts. Ultrastructural analyses displayed vital orchid mycorrhizas formed by fungi with an imperforate parenthesome and cell wall slime bodies typical for the genus Tulasnella. Three different Tulasnella isolates were obtained in pure culture. Phylogenetic analysis of the mycorrhiza forming Tulasnella and the Tulasnella isolates based on coding regions of the ribosomal large subunit (nucLSU) and the 5.8S subunit, including parts of the internal transcribed spacers, yielded seven distinct Tulasnella clades. Tulasnella mycobionts in Stelis concinna were restricted to two Tulasnella sequence types while the other orchids were associated with up to six Tulasnella sequence types. All Tulasnella sequences were new to science and distinct from known sequences of mycobionts of terrestrial orchids. These results indicate that tulasnelloid fungi, adapted to the conditions on tree stems, might be important for orchid growth and maintenance in the Andean cloud forest.
Additional info:	Technical details published in Mycological Resear... Additional info: Technical details published in Mycological Research 110: 1257-1270, 2006, Diverse tulasnelloid fungi form mycorrhizas with epiphytic orchids in an Andean cloud forest. Juan Pablo Suáreza, Michael Weiss, Andrea Abele, Sigisfredo Garnica, Franz Oberwinkler and Ingrid Kottke
Keywords:	\| biodiversity \| fungi \|
Intellectual rights:	FOR816 data user agreement

1. Entity:

Entity name:	Tulasnellales
Entity type:	dataTable
Attributes:	Organism (Organism) (Unitless) GenBank number of the organism (GenBNoOrg) (Unitless) Sequence type of organism (SeqType) (Unitless) Life form (LifeForm) (Unitless) Species name of the host (HostSpecies) (Unitless) ID of the sample (SampleID) (Unitless) Life form of host (HostLifeForm) (Unitless) ID of the plot (PlotID) (Unitless) Site name (Site_name) (Unitless)

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Arbuscular mycorrhizal fungal sequences of trees in the pristine forest and seedlings in the reforestation plots and nursery

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Dataset ID:	602
Last updated:	2009-06-25
Dataset creators:	Ingeborg Haug
Contact:	Ingeborg Haug
Temporal coverage:	2000-11-30 00:00:00 - 2006-09-25 12:24:00
Geographic coverage:	ECSF forest and pasture
Abstract:	Abstract:
Additional info:	--- Additional info:
Keywords:	\| mycorrhizal fungi \| tree \| seedlings \|
Intellectual rights:	FOR816 data user agreement

1. Entity:

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Entity name:	Arbuscular mycorrhizal fungal sequences
Entity type:	dataTable
Attributes:	Organism (Organism) (Unitless) GenBank number of the organism (GenBNoOrg) (Unitless) Life form (LifeForm) (Unitless) Species name of the host (HostSpecies) (Unitless) ID of the sample (SampleID) (Unitless) ID of the plot (PlotID) (Unitless) Site name (Site_name) (Unitless) ID of the culture (CultureID) (Unitless) Date and Time (datetime) (Unitless)

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Tulasnellales, Sebacinales and Atractiellales associated with terrestrial and epiphytic orchids in RBSF

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Dataset ID:	808
Last updated:	2010-06-01
Dataset creators:	Ingrid Kottke Darío Cruz Juan Pablo Suarez Paulo Herrera
Contact:	Ingrid Kottke
Temporal coverage:	2008-04-01 00:00:00 - 2008-04-01 00:00:00
Geographic coverage:	Investigation area ECSF
Abstract:	The mycobionts of 103 terrestrial and epiphytic o... Abstract: The mycobionts of 103 terrestrial and epiphytic orchid individuals, sampled in the RBSF from permanently estabished orchid plots, were identified by sequencing the whole ITS1-5.8S-ITS2 region and part of 28S rDNA. Tulasnellales, Sebacinales and for the first time Atractiellales were found.
Additional info:	Plots were established by members of UTPL, Dr. Ju... Additional info: Plots were established by members of UTPL, Dr. Juan Pablo Suarez and his coworkers, on the orchid regeneration land slide, on basis of T1 and in uppar part of T2 as given by geographic parameters. All laboratory work was carried out by the UTPL group mentioned above.
Keywords:	\| Sebacinales \| mycorrhizal fungi \| biodiversity \| forest and open land \| ECSF \| Orchidaceae \| Tulasnellales \| Atractiellales \|
Intellectual rights:	FOR816 data user agreement

1. Entity:

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Entity name:	orchid mycorrhizal fungi
Entity type:	dataTable
Attributes:	Life form of host (HostLifeForm) (Unitless) ID of the sample (SampleID) (Unitless) Species name of the host (HostSpecies) (Unitless) Organism (Organism) (Unitless) GenBank number of the organism (GenBNoOrg) (Unitless) Life form (LifeForm) (Unitless) Sequence type of organism (SeqType) (Unitless) ID of the plot (PlotID) (Unitless) Minimum geographic latitude (geocoordinate_latitude_min) [Degree] Maximum geographic latitude (geocoordinate_latitude_max) [Degree] Minimum geographic longitude (geocoordinate_longitude_min) [Degree] Maximum geographic longitude (geocoordinate_longitude_max) [Degree] Height above mean sea level (geocoordinate_amsl) [Meter] Site name (Site_name) (Unitless)

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Sequences of arbuscular mycorrhizal fungi of trees and seedlings in the pristine forest and reforestation plots

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Dataset ID:	1152
Last updated:	2012-09-13
Dataset creators:	Ingeborg Haug
Contact:	Ingeborg Haug
Temporal coverage:	2010-04-20 00:00:00 - 2012-10-20 00:00:00
Geographic coverage:	ECSF forest and pasture
Abstract:	The table is a list of arbuscular mycorrhizal fu... Abstract: The table is a list of arbuscular mycorrhizal fungi with their host plants. The sequences are deposited in the NCBI GenBank.
Additional info:	--- Additional info:
Keywords:	\| biodiversity \| forest and open land \| ECSF \| reforestation \| AM fungi \| arbuscular mycorrhiza \|
Intellectual rights:	FOR816 data user agreement

1. Entity:

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Entity name:	HaugC2_ArbuscularMycorrhizalFungi
Entity type:	dataTable
Attributes:	Organism (Organism) (Unitless) GenBank number of the organism (GenBNoOrg) (Unitless) Life form (LifeForm) (Unitless) Species name of the host (HostSpecies) (Unitless) ID of the culture (CultureID) (Unitless) Site name (Site_name) (Unitless) ID of the plot (PlotID) (Unitless)

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Entity name:	HaugC2_ArbuscularMycorrhizalFungi
Entity type:	dataTable
Attributes:	Organism (Organism) (Unitless) GenBank number of the organism (GenBNoOrg) (Unitless) Life form (LifeForm) (Unitless) Species name of the host (HostSpecies) (Unitless) ID of the culture (CultureID) (Unitless) Site name (Site_name) (Unitless) ID of the plot (PlotID) (Unitless)

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Entity name:	HaugC2_ArbuscularMycorrhizalFungi
Entity type:	dataTable
Attributes:	Organism (Organism) (Unitless) GenBank number of the organism (GenBNoOrg) (Unitless) Life form (LifeForm) (Unitless) Species name of the host (HostSpecies) (Unitless) ID of the culture (CultureID) (Unitless) Site name (Site_name) (Unitless) ID of the plot (PlotID) (Unitless)

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Woody species regeneration on pasture, fern and shrub sites

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Dataset ID:	1658
Last updated:	2017-09-04
Dataset creators:	Ximena Palomeque Nikolay Aguirre Sven Günter Patrick Hildebrandt Michael Weber
Contact:	Patrick Hildebrandt
Temporal coverage:	2003-07-01 00:00:00 - 2007-07-01 00:00:00
Geographic coverage:	ECSF pasture
Abstract:	Monitoring of woody species regeneration was done... Abstract: Monitoring of woody species regeneration was done in 2003, 2005 and 2007 on 48 subplots of 116 m2 on pasture, fern, and shrub sites. Half of the subsamples were randomly selected and manually treated by cutting back all competing herbaceous species with a machete every 4 months from 2003 to 2005. Competing species refers to dominant, exotic and aggressive species such as grasses (S. sphacelata) in the Pasture site, and exotic fern (P. arachnoideum) in the Bracken and Shrub sites, woody native species were not removed.
Additional info:	Palomeque, X.; Günter, S.; Siddons, D.; Hildebran... Additional info: Palomeque, X.; Günter, S.; Siddons, D.; Hildebrandt, P.; Stimm, B.; Aguirre, N.; Arias, R. & Weber, M. (2017): Natural or assisted succession as approach of forest recovery on abandoned lands with different land use history in the Andes of Southern Ecuador. New Forests 1(1), 1-10 DOI: http://dx.doi.org/10.1007/s11056-017-9590-8.
Keywords:	\| pasture \| succession \| abandoned pasture \| species richness \| abundance \| tree regeneration \| bracken fern \|
Intellectual rights:	PAK 823-825 data user agreement. (www.tropicalmountainforest.org/dataagreementp3.do)

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Entity name:	natural_or_assisted_succession
Entity type:	dataTable
Attributes:	Date and Time (datetime) (Unitless) Site name (Site_name) (Unitless) ID of the plot (PlotID) (Unitless) UTM x-coordinate (UTMCoordX) [Meter] UTM y-coordinate (UTMCoordY) [Meter] elevation (El) [Meter] Treatment (treatment) (Unitless) Species name (Species) (Unitless) Family name (Family) (Unitless) Life form (LifeForm) (Unitless) Abundance (abundance) (Unitless)

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Environmental changes in biodiversity hotspot ecosystems of
South Ecuador: RESPonse and feedback effECTs (FOR2730)

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Environmental changes in biodiversity hotspot ecosystems of South Ecuador: RESPonse and feedback effECTs (FOR2730)

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Environmental changes in biodiversity hotspot ecosystems of
South Ecuador: RESPonse and feedback effECTs (FOR2730)